Publication: Evaluating how rimantadines control the proton gating of the influenza A M2-proton port via allosteric binding outside of the M2-channel: MD simulations
Issued Date
2011-04-01
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ISSN
14756374
14756366
14756366
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2-s2.0-79952770348
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Mahidol University
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SCOPUS
Bibliographic Citation
Journal of Enzyme Inhibition and Medicinal Chemistry. Vol.26, No.2 (2011), 162-168
Suggested Citation
Pathumwadee Intharathep, Thanyada Rungrotmongkol, Panita Decha, Nadtanet Nunthaboot, Nopphorn Kaiyawet, Teerakiat Kerdcharoen, Pornthep Sompornpisut, Supot Hannongbua Evaluating how rimantadines control the proton gating of the influenza A M2-proton port via allosteric binding outside of the M2-channel: MD simulations. Journal of Enzyme Inhibition and Medicinal Chemistry. Vol.26, No.2 (2011), 162-168. doi:10.3109/14756366.2010.482530 Retrieved from: https://repository.li.mahidol.ac.th/handle/20.500.14594/12817
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Title
Evaluating how rimantadines control the proton gating of the influenza A M2-proton port via allosteric binding outside of the M2-channel: MD simulations
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Abstract
In order to understand how rimantadine (RMT) inhibits the proton conductance in the influenza A M2 channel via the recently proposed "allosteric mechanism", molecular dynamics simulations were applied to the M2-tetrameric protein with four RMTs bound outside the channel at the three protonation states: the 0H-closed, 1H-intermediate and 3H-open situations. In the 0H-closed state, a narrow channel with the RMT-Asp44-Trp41 H-bond network was formed, therefore the water penetration through the channel was completely blocked. The Trp41-Asp44 interaction was absent in the 1H-intermediate state, whilst the binding of RMT to Asp44 remained, which resulted in a weakened helix-helix packing, therefore the channel was partially prevented. In the 3H-open state it was found that the electrostatic repulsion from the three charged His37 residues allowed the Trp41 gate to open, permitting water to penetrate through the channel. This agreed well with the potential of the means force which is in the following order: 0H > 1H > 3H. © 2011 Informa UK, Ltd.