Publication: Revisiting the taxonomy of the Rattini tribe: A phylogeny-based delimitation of species boundaries
2
Issued Date
2010-06-22
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ISSN
14712148
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2-s2.0-77953629995
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Mahidol University
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SCOPUS
Bibliographic Citation
BMC Evolutionary Biology. Vol.10, No.1 (2010)
Suggested Citation
Marie Pagès, Yannick Chaval, Vincent Herbreteau, Surachit Waengsothorn, Jean François Cosson, Jean Pierre Hugot, Serge Morand, Johan Michaux Revisiting the taxonomy of the Rattini tribe: A phylogeny-based delimitation of species boundaries. BMC Evolutionary Biology. Vol.10, No.1 (2010). doi:10.1186/1471-2148-10-184 Retrieved from: https://repository.li.mahidol.ac.th/handle/123456789/28489
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Title
Revisiting the taxonomy of the Rattini tribe: A phylogeny-based delimitation of species boundaries
Other Contributor(s)
Montpellier SupAgro
Territoires, Environnement, Teledetection et Information Spatiale
Mahidol University
Thailand Institute of Scientific and Technological Research (TISTR)
Museum National d'Histoire Naturelle
Institut des Sciences de l'Evolution UMR 5554
CIRAD Centre de Recherche de Montpellier
Universite de Liege
Territoires, Environnement, Teledetection et Information Spatiale
Mahidol University
Thailand Institute of Scientific and Technological Research (TISTR)
Museum National d'Histoire Naturelle
Institut des Sciences de l'Evolution UMR 5554
CIRAD Centre de Recherche de Montpellier
Universite de Liege
Abstract
Background. Rodents are recognized as hosts for at least 60 zoonotic diseases and may represent a serious threat for human health. In the context of global environmental changes and increasing mobility of humans and animals, contacts between pathogens and potential animal hosts and vectors are modified, amplifying the risk of disease emergence. An accurate identification of each rodent at a specific level is needed in order to understand their implications in the transmission of diseases. Among the Muridae, the Rattini tribe encompasses 167 species inhabiting South East Asia, a hotspot of both biodiversity and emerging and re-emerging diseases. The region faces growing economical development that affects habitats, biodiversity and health. Rat species have been demonstrated as significant hosts of pathogens but are still difficult to recognize at a specific level using morphological criteria. DNA-barcoding methods appear as accurate tools for rat species identification but their use is hampered by the need of reliable identification of reference specimens. In this study, we explore and highlight the limits of the current taxonomy of the Rattini tribe. Results. We used the DNA sequence information itself as the primary information source to establish group membership and estimate putative species boundaries. We sequenced two mitochondrial and one nuclear genes from 122 rat samples to perform phylogenetic reconstructions. The method of Pons and colleagues (2006) that determines, with no prior expectations, the locations of ancestral nodes defining putative species was then applied to our dataset. To give an appropriate name to each cluster recognized as a putative species, we reviewed information from the literature and obtained sequences from a museum holotype specimen following the ancient DNA criteria. Conclusions. Using a recently developed methodology, this study succeeds in refining the taxonomy of one of the most difficult groups of mammals. Most of the species expected within the area were retrieved but new putative species limits were also indicated, in particular within Berylmys and Rattus genera, where future taxonomic studies should be directed. Our study lays the foundations to better investigate rodent-born diseases in South East Asia and illustrates the relevance of evolutionary studies for health and medical sciences. © 2010 Pagès et al; licensee BioMed Central Ltd.