Publication: Pseudonocardia mangrovi sp. Nov., isolated from soil
Issued Date
2018-09-01
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ISSN
14665026
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2-s2.0-85053919197
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Mahidol University
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SCOPUS
Bibliographic Citation
International Journal of Systematic and Evolutionary Microbiology. Vol.68, No.9 (2018), 2949-2955
Suggested Citation
Suchart Chanama, Suphansa Janphen, Chanwit Suriyachadkun, Manee Chanama Pseudonocardia mangrovi sp. Nov., isolated from soil. International Journal of Systematic and Evolutionary Microbiology. Vol.68, No.9 (2018), 2949-2955. doi:10.1099/ijsem.0.002927 Retrieved from: https://repository.li.mahidol.ac.th/handle/20.500.14594/44681
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Title
Pseudonocardia mangrovi sp. Nov., isolated from soil
Abstract
© 2018 IUMS. A novel Gram-stain-positive, aerobic actinomycete, designated strain SMC 195T, was isolated from soil collected from a mangrove forest in Thailand. The strain produced extensively branched substrate and aerial mycelia. The substrate mycelium was fragmented into rod-shaped elements, and spore chains consisting of smooth and rod-shaped spores were formed on the aerial mycelium. The results of phylogenetic analysis based on 16S rRNA gene sequences indicated that SMC 195Trepresented a member of the genus Pseudonocardia, and the most closely phylogenetically related species were Pseudonocardia yuanmonensisJCM 18055T(99.2 % 16S rRNA gene sequence similarity), Pseudonocardia halophobicaNRRL B-16514T(98.9 %) and Pseudonocardia kujensisNRRL B-24890T(98.7 %). However, the DNA-DNA relatedness values between SMC 195Tand the closest phylogenetically related species were significantly below 70 %. The G+C content of the genomic DNA was 74±0.8 mol%. The cell wall peptidoglycan contained meso-diaminopimelic acid. The whole-cell sugars consisted of arabinose, galactose, glucose, rhamnose and ribose. The menaquinone was MK-8(H4) only. The major cellular fatty acid was the branched fatty acid iso-C16 : 0 (33.6 %). The polar lipids detected were phosphatidylethanolamine, phosphatidylmethylethanolamine, hydroxyphosphatidylethanolamine, diphosphatidylglycerol, phosphatidylinositol and unidentified glycolipids. On the basis of the results from phenotypic, chemotaxonomic and genotypic studies, it is concluded that SMC 195Trepresents a novel species of the genus Pseudonocardia, for which the name Pseudonocardia mangrovi sp. nov. is proposed. The type strain is SMC 195T(=TBRC 7778T=NBRC 113150T).