Whole genomes from bacteria collected at diagnostic units around the world 2020
Issued Date
2023-12-01
Resource Type
eISSN
20524463
Scopus ID
2-s2.0-85171410753
Pubmed ID
37717051
Journal Title
Scientific Data
Volume
10
Issue
1
Rights Holder(s)
SCOPUS
Bibliographic Citation
Scientific Data Vol.10 No.1 (2023)
Suggested Citation
Nag S., Larsen G., Szarvas J., Birkedahl L.E.K., Gulyás G.M., Ciok W.J., Lagermann T.M., Tafaj S., Bradbury S., Collignon P., Daley D., Dougnon V., Fabiyi K., Coulibaly B., Dembélé R., Nikiema G., Magloire N., Ouindgueta I.J., Hossain Z.Z., Begum A., Donchev D., Diggle M., Turnbull L.A., Lévesque S., Berlinger L., Sogaard K.K., Guevara P.D., Valderrama C.D., Maikanti P., Amlerova J., Drevinek P., Tkadlec J., Dilas M., Kaasch A., Westh H.T., Bachtarzi M.A., Amhis W., Salazar C.E.S., Villacis J.E., Lúzon M.A.D., Palau D.B., Duployez C., Paluche M., Asante-Sefa S., Moller M., Ip M., Mareković I., Pál-Sonnevend A., Cocuzza C.E., Dambrauskiene A., Macanze A., Cossa A., Mandomando I., Nwajiobi-Princewill P., Okeke I.N., Kehinde A.O., Adebiyi I., Akintayo I., Popoola O., Onipede A., Blomfeldt A., Nyquist N.E., Bocker K., Ussher J., Ali A., Ullah N., Khan H., Gustafson N.W., Jarrar I., Al-Hamad A., Luvira V., Paveenkittiporn W., Baran I., Mwansa J.C.L., Sikakwa L., Yamba K., Hendriksen R.S., Aarestrup F.M. Whole genomes from bacteria collected at diagnostic units around the world 2020. Scientific Data Vol.10 No.1 (2023). doi:10.1038/s41597-023-02502-7 Retrieved from: https://repository.li.mahidol.ac.th/handle/20.500.14594/90202
Title
Whole genomes from bacteria collected at diagnostic units around the world 2020
Author(s)
Nag S.
Larsen G.
Szarvas J.
Birkedahl L.E.K.
Gulyás G.M.
Ciok W.J.
Lagermann T.M.
Tafaj S.
Bradbury S.
Collignon P.
Daley D.
Dougnon V.
Fabiyi K.
Coulibaly B.
Dembélé R.
Nikiema G.
Magloire N.
Ouindgueta I.J.
Hossain Z.Z.
Begum A.
Donchev D.
Diggle M.
Turnbull L.A.
Lévesque S.
Berlinger L.
Sogaard K.K.
Guevara P.D.
Valderrama C.D.
Maikanti P.
Amlerova J.
Drevinek P.
Tkadlec J.
Dilas M.
Kaasch A.
Westh H.T.
Bachtarzi M.A.
Amhis W.
Salazar C.E.S.
Villacis J.E.
Lúzon M.A.D.
Palau D.B.
Duployez C.
Paluche M.
Asante-Sefa S.
Moller M.
Ip M.
Mareković I.
Pál-Sonnevend A.
Cocuzza C.E.
Dambrauskiene A.
Macanze A.
Cossa A.
Mandomando I.
Nwajiobi-Princewill P.
Okeke I.N.
Kehinde A.O.
Adebiyi I.
Akintayo I.
Popoola O.
Onipede A.
Blomfeldt A.
Nyquist N.E.
Bocker K.
Ussher J.
Ali A.
Ullah N.
Khan H.
Gustafson N.W.
Jarrar I.
Al-Hamad A.
Luvira V.
Paveenkittiporn W.
Baran I.
Mwansa J.C.L.
Sikakwa L.
Yamba K.
Hendriksen R.S.
Aarestrup F.M.
Larsen G.
Szarvas J.
Birkedahl L.E.K.
Gulyás G.M.
Ciok W.J.
Lagermann T.M.
Tafaj S.
Bradbury S.
Collignon P.
Daley D.
Dougnon V.
Fabiyi K.
Coulibaly B.
Dembélé R.
Nikiema G.
Magloire N.
Ouindgueta I.J.
Hossain Z.Z.
Begum A.
Donchev D.
Diggle M.
Turnbull L.A.
Lévesque S.
Berlinger L.
Sogaard K.K.
Guevara P.D.
Valderrama C.D.
Maikanti P.
Amlerova J.
Drevinek P.
Tkadlec J.
Dilas M.
Kaasch A.
Westh H.T.
Bachtarzi M.A.
Amhis W.
Salazar C.E.S.
Villacis J.E.
Lúzon M.A.D.
Palau D.B.
Duployez C.
Paluche M.
Asante-Sefa S.
Moller M.
Ip M.
Mareković I.
Pál-Sonnevend A.
Cocuzza C.E.
Dambrauskiene A.
Macanze A.
Cossa A.
Mandomando I.
Nwajiobi-Princewill P.
Okeke I.N.
Kehinde A.O.
Adebiyi I.
Akintayo I.
Popoola O.
Onipede A.
Blomfeldt A.
Nyquist N.E.
Bocker K.
Ussher J.
Ali A.
Ullah N.
Khan H.
Gustafson N.W.
Jarrar I.
Al-Hamad A.
Luvira V.
Paveenkittiporn W.
Baran I.
Mwansa J.C.L.
Sikakwa L.
Yamba K.
Hendriksen R.S.
Aarestrup F.M.
Author's Affiliation
Université de Dédougou
Centro de Investigação em Saúde de Manhiça CISM
College of Medicine, University of Ibadan
Faculty of Tropical Medicine, Mahidol University
Fiona Stanley Hospital
Lietuvos sveikatos mokslų universitetas
Arab American University, Palestine
Dronning Ingrids Hospital
University Teaching Hospital Lusaka
University Hospital Centre Tirana
Centre de Recherche en Sante de Nouna
University of Abomey-Calavi
Pontificia Universidad Católica del Ecuador
Ghana Health Service
Ministry of Health Cyprus
Akershus University Hospital
National University of Sciences and Technology Pakistan
Khyber Medical College
Instituto Nacional de Salud
KBC Zagreb
Universitätsspital Basel
Fakultní Nemocnice v Motole
Karadeniz Technical University
Otto-von-Guericke-Universität Magdeburg
CHU Lille
University of Otago
Canberra Hospital
University of Dhaka
Università degli Studi di Milano-Bicocca
Hospital Universitari de Bellvitge
University Hospital Alexandrovska
Technical University of Denmark
Obafemi Awolowo University
Centre Hospitalier de Valenciennes
Qatif Central Hospital
National Hospital, Abuja
University of Pécs Medical School
University of Ibadan
Centre Hospitalier Universitaire de Sherbrooke
Fakultní Nemocnice Plzeň
Chinese University of Hong Kong
Hvidovre Hospital
Universitat de Barcelona
Laboratorio Central de Salud Publico
University of Joseph KI-ZERBO
National Institute of Health
National Institute of Public Health Research “Dr. Leopoldo Izquieta Pérez”
Lusaka Apex Medical University
Levy Mwanawasa Medical University
Alberta Precision Laboratories
Laboratories Bioanalytica
National Institutes of Medical Research
Centre Hospitalo-Universitaire
Centro de Investigação em Saúde de Manhiça CISM
College of Medicine, University of Ibadan
Faculty of Tropical Medicine, Mahidol University
Fiona Stanley Hospital
Lietuvos sveikatos mokslų universitetas
Arab American University, Palestine
Dronning Ingrids Hospital
University Teaching Hospital Lusaka
University Hospital Centre Tirana
Centre de Recherche en Sante de Nouna
University of Abomey-Calavi
Pontificia Universidad Católica del Ecuador
Ghana Health Service
Ministry of Health Cyprus
Akershus University Hospital
National University of Sciences and Technology Pakistan
Khyber Medical College
Instituto Nacional de Salud
KBC Zagreb
Universitätsspital Basel
Fakultní Nemocnice v Motole
Karadeniz Technical University
Otto-von-Guericke-Universität Magdeburg
CHU Lille
University of Otago
Canberra Hospital
University of Dhaka
Università degli Studi di Milano-Bicocca
Hospital Universitari de Bellvitge
University Hospital Alexandrovska
Technical University of Denmark
Obafemi Awolowo University
Centre Hospitalier de Valenciennes
Qatif Central Hospital
National Hospital, Abuja
University of Pécs Medical School
University of Ibadan
Centre Hospitalier Universitaire de Sherbrooke
Fakultní Nemocnice Plzeň
Chinese University of Hong Kong
Hvidovre Hospital
Universitat de Barcelona
Laboratorio Central de Salud Publico
University of Joseph KI-ZERBO
National Institute of Health
National Institute of Public Health Research “Dr. Leopoldo Izquieta Pérez”
Lusaka Apex Medical University
Levy Mwanawasa Medical University
Alberta Precision Laboratories
Laboratories Bioanalytica
National Institutes of Medical Research
Centre Hospitalo-Universitaire
Other Contributor(s)
Abstract
The Two Weeks in the World research project has resulted in a dataset of 3087 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units in 35 countries around the world during 2020. A relational database is available with metadata and summary data from selected bioinformatic analysis, such as species prediction and identification of acquired resistance genes.