Publication: Simultaneous Detection of Feces-specific Bacteriophages of Bacteroides fragilis with a Duplex PCR Assay
Issued Date
2017
Resource Type
Language
eng
File Type
application/pdf
No. of Pages/File Size
9 Page
Journal Title
Environment and Natural Resources Journal
Volume
16
Issue
1
Start Page
82
End Page
90
Access Rights
open access
Rights
ผลงานนี้เป็นลิขสิทธิ์ของมหาวิทยาลัยมหิดล ขอสงวนไว้สำหรับเพื่อการศึกษาเท่านั้น ต้องอ้างอิงแหล่งที่มา ห้ามดัดแปลงเนื้อหา และห้ามนำไปใช้เพื่อการค้า
Rights Holder(s)
Faculty of Environment and Resource Studies Mahidol University
Bibliographic Citation
Environment and Natural Resources Journal. Vol. 16, No. 1 (Jan - Jun 2018), 82-90
Suggested Citation
Natcha Chyerochana, Benjarath Pupacdi Javed, Pornjira Somnark, Skorn Mongkolsuk, Kwanrawee Sirikanchana Simultaneous Detection of Feces-specific Bacteriophages of Bacteroides fragilis with a Duplex PCR Assay. Environment and Natural Resources Journal. Vol. 16, No. 1 (Jan - Jun 2018), 82-90. 90. Retrieved from: https://repository.li.mahidol.ac.th/handle/123456789/114025
Research Projects
Organizational Units
Authors
Journal Issue
Thesis
Title
Simultaneous Detection of Feces-specific Bacteriophages of Bacteroides fragilis with a Duplex PCR Assay
Author's Affiliation
Chulabhorn Research Institute. Research Laboratory of Biotechnology
Chulabhorn Research Institute. Translational Research Unit
Chulabhorn Graduate Institute. Program in Applied Biological Sciences: Environmental Health
Ministry of Education. Center of Excellence on Environmental Health and Toxicology
Mahidol University. Faculty of Science. Department of Biotechnology
Chulabhorn Research Institute. Translational Research Unit
Chulabhorn Graduate Institute. Program in Applied Biological Sciences: Environmental Health
Ministry of Education. Center of Excellence on Environmental Health and Toxicology
Mahidol University. Faculty of Science. Department of Biotechnology
Abstract
Bacteriophages of the Bacteroides fragilis strains HSP40 and RYC2056 are used as indicators of human-specific and general (non-host specific) fecal pollution in water bodies. However, conventional anaerobic cultivation methods require 1-2 days of incubation. To overcome this limitation, in this study, we developed a DNA-based method to simultaneously detect representative bacteriophages (B40-8 and B56-3) that infect B. fragilis strains HSP40 and RYC2056, respectively. Both phages yielded a 224-bp amplicon with the primer pair BT5414/BT5415, and an additional 152-bp PCR product was observed for B40-8 with the primer pair BT5579/BT5580. The detection limits for B40-8 and B56-3 were 10-5 and 10-4 ng of pure DNA, and 1 and 50 ng of DNA template when 5 and 5,000 PFU/mL were spiked into distilled water, respectively. The assay exhibited a higher sensitivity for sewage samples, with < 0.1 and 15 PFU/mL of phages infecting HSP40 and RYC2056, respectively. The assay did not produce false positive results for the Bacteroides phages PG76, HB13, and GA17 or for the enterococcal phages AIM06 and SR14. The assay also detected RYC2056 phages that were isolated from sewage samples and the phage B40-8 when it was spiked into raw sewage. Thus, the newly developed PCR assay demonstrated potential for the environmental monitoring of Bacteroides bacteriophages, decreasing the analysis time to a few hours.